Parallel and distributed high-performance computing

solutions in Systems Biology

Systems Biology deals with the analysis of natural systems at various scales of complexity, requiring different modeling frameworks and computational methods. The applicability of these approaches may be hampered by excessively burdensome execution times. The scope of this special session is to bring together researchers involved in the development of computational methods specifically accelerated either by means of conventional architectures (e.g., computer clusters, GRID computing) or by unconventional technologies (e.g., Graphics Processing Units, Many Integrated Core coprocessors, cloud computing, biomimetic devices).

Important Dates:


Paper submission: 15th Nov 2017
Acceptance notification: 5th Dic 2017
Camera ready due: 22nd Dic 2017
Conference: 21st - 23rd Mar 2018

Topics:

  • analysis at the single-cell level
  • analysis and visualization of genome-wide models
  • analysis of robustness of cellular networks
  • Bayesian inference of biological systems
  • biomedical model parameterization
  • cancer progression models
  • design of synthetic biological components and circuits
  • drug design
  • emergent properties in complex biological systems
  • flux balance analysis
  • biomedical image analysis
  • metabolic engineering
  • metabolic pathway analysis
  • model verification and refinement methods
  • multi-scale modeling and simulation of biological systems
  • parameter estimation methods
  • personalized models in Systems Medicine
  • reverse engineering of reaction networks
  • software tools for Systems and Synthetic Biology
  • spatio-temporal modeling and simulation of biological systems

Programme Co-chairs:

Daniela Besozzi, Univ. degli Studi di Milano-Bicocca, Italy, <daniela[DOT]besozzi[AT]disco[DOT]unimib[DOT]it>

Paolo Cazzaniga, Univ. degli Studi di Bergamo, Italy, <paolo[DOT]cazzaniga[AT]unibg[DOT]it>

Marco S. Nobile, Univ. degli Studi di Milano-Bicocca, Italy, <nobile[[AT]disco[DOT]unimib[DOT]it>

Carlos F. Lopez, Vanderbilt University, Nashville, TN, United States


Programme Committee:

John Albeck (UC Davis, USA)

Daniela Besozzi (University of Milano-Bicocca, Italy)

Michael L. Blinov (University of Connecticut Health Center, USA)

Tiziana Castrignanò (CINECA, Italy)

Paolo Cazzaniga (University of Bergamo, Italy)

Eric J. Deeds (University of Kansas, USA)

Mohammad Fallahi-Sichani (University of Michigan Medical School, USA)

James R. Faeder (University of Pittsburgh, USA)

Hitoshi Iba (University of Tokyo, Japan)

Daniel C. Kirouac (Genentech Inc., USA)

David Klinke (West Virginia University, USA)

Robin E. C. Lee (University of Pittsburgh, USA)

Carlos F. Lopez (Vanderbilt University, USA)

Molly Maleckar (Allen Institute for Cell Science, USA)

Giancarlo Mauri (University of Milano-Bicocca, Italy)

Marco S. Nobile (University of Milano-Bicocca, Italy)

Ion Petre (Åbo Akademi University, Finland)

Alex Pothen (Purdue University, USA)

Daniele Ramazzotti (Stanford School of Medicine, USA)

Filippo Spiga (University of Cambridge, UK)

David Umulis (Purdue University, USA)

Marco Villani (University of Modena and Reggio Emilia, Italy)